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Top Boutique Hotels in Crete

Crete is home to a variety of boutique hotels, each offering a unique blend of history, style, and comfort. Whether you're after a chic retreat with modern amenities or a historic mansion brimming with character, you'll find an array of options to suit your taste. From properties that blend rustic charm with contemporary design to those that offer luxurious amenities in intimate settings, Crete's boutique hotels cater to a range of preferences. Expect to be charmed by the unique architecture, personalised service, and prime locations that provide easy access to local attractions.

Top picks for a:

The Authentic Village Boutique Hotel

Crete (Crete)

A beautifully crafted property on Crete's south coast. Rooms are finished with traditional stonework and lots of stylish warm wood, plus luxurious amenities including handmade beds with cocomat mattresses. Some boast a balcony with a sea view. A romantic hideaway on the quieter side of the island.

  • Romantic Break - With its adults only policy, beautifully crafted interiors and intimate atmosphere, it's prefect for romantics
  • Hideaway - Tucked away in a charming village on Crete's South Coast, this is truly hidden gem
  • Value chic - Beautifully done rooms with extremely reasonable rates
  • Great walks - The hotel organises walking trips to Imbros and Aradena gorge, weekly
from €72 for 1 room, 1 night including taxes & fees
Rimondi Boutique Hotel

Rethymno

A small luxury hotel set across two original buildings in historic Rethymno. A collection of stylish rooms, suites & maisonettes feel traditional yet fresh. The best have private hot tubs and balconies. There is a spoiling spa and a chic rooftop pool area. A romantic spot, yet very family-friendly.

  • Beach nearby - Located near an enormous swathe of sandy beach - you are getting the best of both worlds here with both culture and beach nearby
  • Historic - Set across two original buildings in the heart of the historic centre, this property has a real sense of place
  • Romantic Break - The palazzo offers a very romantic setting but for something a little extra pick the indulgent Spa Suite
  • Families - The maisonettes that sleep four are a great choice for small families
from €94 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Cressa Suites

Rethymno ( Rethymno Old town, 74100)

A stylishly modern hotel set in a 16th-century Venetian townhouse with a pretty sun-soaked roof terrace. Interiors are fresh and minimally elegant, while rooms feature chic and simple modern furniture with an emphasis on clean lines and natural materials. A sophisticated choice and great value too!

  • Boutique - Set in a former Venetian mansion which has been beautifully converted into a chic boutique
  • Romantic Break - With four-poster beds and a romantic roof terrace to enjoy a cocktail on
  • Great walks - Take a picnic and set off on one of the lovely coastal walks with a beautiful mountain backdrop
  • Cooking classes - Enjoy a cooking class on the hotel rooftop
from €100 for 1 room, 1 night including taxes & fees
Elia Fatma Hanoum

Chania (Crete)

It's all about the vibe at Elia Fatma Hanoum. No cliché blue and white paint here, but an ice-cream palette that wouldn't look out of place in Havana or Marrakech. Bohemian hipsters feel right at home. The roof terrace and colourful bar are a real draw - as is the food! A unique little find.

  • Local exploring - Set back just two streets from the harbour it is perfectly situated for exploring Chania's Old Town
  • Romantic Break - For couples, the suites with a private balcony and large roll-top bath are a romantic option
  • Value chic - With vibrant boutique design and a great location you are getting a lot for your money here
  • Museums - The Archaeological Museum of Chania and its Municipal Art Gallery are on your doorstep
from €109 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Mythos Suites

Rethymno (Crete)

This boutique self-catering setup is a peaceful and friendly haven in the heart of Rethymno. Light and comfortable rooms have private balconies, small kitchens and access to lovely breakfasts. Enjoy the small pool and being near the hub of the town.

  • Value chic - This charming ivy covered hotel is great value for money, with airy, chic rooms boasting private balconies and a courtyard pool
  • Groups - The two-floor apartments with a separate bedroom and kitchenette which sleep four are ideal for a small group
  • Sights nearby - Be sure to check out the historic and impressive Venetian Fortress, within a few minutes walk of the hotel
  • Boutique - With individualised service, just 15 rooms, and elegant design - this is a charming boutique stay
from €120 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Villa Athermigo

Crete (Crete)

Set in the tranquil village of Gavalohori, just outside Chania, this boutique villa offers a serene retreat in a beautifully restored 250-year-old olive press. The rustic yet chic interiors blend minimalist design with historic charm. A peaceful, authentic Cretan escape in an idyllic location.

  • Groups - Perfect for group holidays, rent the entire villa with a private pool, BBQ area, and spacious communal spaces
  • Sailing - Take a scenic boat trip from Almyrida, sail through turquoise waters and explore sea caves
  • Families - Ideal for a family getaway, this serene villa offers a private pool and cosy cottages
  • Great walks - Explore the serene hiking trails around Gavalochori
from €120 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Elia Zampeliou Boutique Hotel

Chania (Crete)

A small waterfront hotel that stands out from the Chania old town crowd by virtue of slick modern décor, up-to-the minute facilities and a level of professional service that you'd expect from a larger luxury hotel. Ideal for couples after a romantic getaway (children are not accommodated).

  • Local exploring - Well positioned in the heart of the Old Town just moments from the harbour with ancient sites, museums, and restaurants nearby
  • Romantic Break - Pick one of the Delux Sea View rooms to enjoy views of the harbour from your bed - a romantic base
  • Concierge - A hands on concierge team who will help you start planning your stay before your arrival
  • Intimate - With just eight rooms this is an intimate base in the heart of the ancient town
from €128 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Villa Ippocampi

Hersonissos (Koutouloufari )

A small owner-run all-suite hotel nestled in a pretty hilltop location. Each suite is individually styled but all have the traditional white and blue colour palette, kitchenettes, and lovely views. A poolside cafe serves casual regional dishes. An adults-only stay, ideal for a tranquil hideaway.

  • Eco break - The hotel relies on solar power for hot water plus there's an eco friendly pool cleaning system and sewage management
  • Total relaxation - With an adult-only policy, a laidback vibe, and a quiet location this is the perfect spot to simply unwind
  • Local exploring - Centrally located, perfect to explore lesser known beaches plus ancient ruins
  • Active Holiday - For those who want to keep busy, there are fabulous hikes in the area
from €130 for 1 room, 1 night including taxes & fees
Amente

Crete (Crete)

A tranquil retreat tucked along Crete’s quieter southern shore. Interiors feature minimalist design with neutral tones, organic textures, and sleek lines. There are rooms with balconies overlooking the rugged terrain and coast, plus a pool with chill-out zone around it to recharge those batteries.

  • Local exploring - With mountain trails and hidden coves nearby, this retreat is perfect for adventurers seeking Crete’s quieter side
  • Sights nearby - Step back in time at the Minoan Palace of Phaistos, with its fascinating history and stunning hilltop views
  • Total relaxation - This adults-only boutique offers a laid-back, serene escape, with minimalist rooms and poolside lounging
  • Great walks - Hike the rugged trails of Crete’s tawny mountains, where ancient ruins and breathtaking vistas await
from €133 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Pepi Boutique Hotel

Rethymno (Crete )

This boutique hotel is nestled in the heart of the historic town of Rethymno. Rooms have a rustic feel, dressed in warm, earthy hues with wood furnishings. Suites offer a separate mezzanine and kitchenette. Enjoy a drink from the bar by the cosy outdoor pool. An intimate and charming guesthouse.

  • Beach Life - Well-located for accessing pretty, sandy beaches, this is a good option for a seaside stay
  • Local exploring - Situated within the historic town of Rethymno, this is a great base for local exploring
  • Romantic Break - The luxurious suites and private hotel pool make this hotel a favourite with couples
  • Sailing - Explore the beautiful coastline starting at this former fishing village; enquire at the hotel about local boat hire
from €142 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Alcanea Boutique Hotel

Chania (Crete)

It's all about attention to detail at Alcanea. Literally a stone's throw from the harbour, rooms enjoy superb views. Café society is on your doorstep, so hip couples will love it plus there's a trendy bar and sumptuous local breakfast on offer. Chic interiors for the trendy traveller.

  • Local exploring - Well placed for exploring by foot with the Maritime museum nextdoor the harbour and city attractions nearby
  • Boutique - Friendly staff, a laidback vibe, and charming casual design make this an attractive boutique stay
  • Family - Interconnecting rooms sleep up to five people making this a good choice for a family break
  • Historic - A thoughtfully renovated Venetian mansion with plenty of original features
from €150 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Ionas Boutique Hotel

Chania (Crete)

Tucked away on a pedestrian square full of potted shrubs and flowering trees, five minutes walk from Chania's Venetian harbour, Ionas Boutique Hotel suits couples and single visitors looking for a quiet haven from which to explore the old town. Rooms range from comfortable to luxurious. A chic base.

  • Local exploring - Situated in a quiet and authentic section of town, with many of the city's monuments and museums within walking distance
  • Romantic Break - For a romantic base pick one of the split-level Superior Suites with beautiful canopied beds and plenty of character
  • Boutique - With plenty of history, this small boutique blends the character of the old with modern comforts seamlessly
  • Intimate - With just nine rooms and occupying a quiet spot, this is a tranquil and intimate hideaway
from €155 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Monastery Estate Venetian Harbour

Chania (Crete)

A boutique retreat merging modern luxury with authentic Cretan history, in Chania’s Venetian Harbour. Interiors boast minimalist decor with exposed stone walls, polished wood, and earthy tones. Guests can unwind in the spa, enjoy exceptional cuisine in the courtyard and refresh in the enclosed pool.

  • Great walks - Embark on an adventure to Samaria Gorge, one of Europe's longest gorges, offering exhilarating hikes amidst dramatic landscapes
  • Total relaxation - Indulge in a rejuvenating wellness experience with a private in-room massage, blending local herbs and ancient techniques
  • Historic - Stay where monastic charm meets modern comfort, with original stone arches and centuries-old architecture at every turn
  • Local exploring - Nestled in the heart of Chania, this hotel offers a perfect base for discovering vibrant markets and hidden gems
from €164 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Serenissima Boutique Hotel

Chania (Chania 731 31 )

A boutique hotel nestled down a quaint cobbled street in Chania's Old Town. True to its Venetian history, the decor is simple yet elegant, but with modern amenities. The beach is a short stroll away, with numerous others dotted along the coast- and the outstanding cuisine is bound to impress!

  • Local exploring - Close to beaches and lovely coastline walks, so there's plenty of sea-exploring to do and Chania itself is a gorgeous old town
  • Hotel boats for hire - The Yacht Club is a two-minute stroll away, at the old harbour, where you can embark on private expeditions
  • Beach Life - Spend lazy days on nearby Elafonissi Beach, known for its turquoise waters and pinkish sand
  • Boutique - Interiors perfectly mix the building's original features with subtle-chic modern design
from €171 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Thalassa Boutique Hotel

Rethymno (Crete)

This exclusive beachfront hotel in Rethymno recently underwent a full renovation. Boasting four stars, rooms are dressed in a traditional style; premium linens complement exposed stone walls and the best suites have terraces with sea views. Take a dip in the courtyard pool; a stylish seaside hotel.

  • Local exploring - Located in the historic town of Rethymno, this hotel is a great starting point for exploring local sights
  • Beach Life - Sitting in a prime location on the seafront, you can't get a more convenient base for a beach holiday
  • Sights nearby - Visit the Monastery of Arkadi, a historic monastery which, according to tradition, was founded by Emperor Heraklion
  • Local markets - Explore Heraklion's central market and find unique souvenirs to take home from your holiday
from €185 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Avli Lounge Apartments

Rethymno

Exceptionally luxurious boutique hotel with an award-winning restaurant and beautiful rooms. Romantic rooms and suites meld rustic chic with modern art. Eclectic living areas and fabulous food. Romantic, gourmet, and plenty to do locally.

  • Foodies - An exceptional courtyard restaurant serving up highly acclaimed Cretan dishes paired with fine wines
  • Boutique - Pop colours stand out against original stone in this oh-so-chic boutique
  • Romantic Break - Beautifully romantic suites complete with chandeliers and object d'art
  • Sights nearby - Walk around the old Venetian harbour with the well preserved Fortezza Castle
from €189 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Ambassador's Residence

Chania (Crete)

A 19th-century mansion converted into a 5* hotel set in Chania's Old Town. Once an ambassador's residence, expect an amalgamation of the old and new - rustic style meets modern amenities with exposed stone and espresso machines. With prime harbour views, this is an easy choice for local exploring.

  • Active Holiday - Whether you want to explore historic sites or hike, sail, and try your hand at watersports - there is plenty to do here
  • Local exploring - You won't find a better location - overlooking Chania's harbour and stumbling distance from its bars and cafes
  • Historic - Once the private residence of 19th-century German Ambassador and with many of the original features remaining
  • Boutique - The property has been sensitively updated mixing original features with fresh modern design
from €218 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Kapsaliana Village Hotel

Crete (Kapsaliana)

A renovated 18th-century olive press and surrounding buildings with simple Cretan architecture; stone walls, arches and wooden beams with minimalist-chic interiors. Rooms feature comfy beds, sofas and private terraces with views. Contemporary Greek cuisine is served and there's a large outdoor pool.

  • Eco break - Food is locally sourced and organic, everything that can be is recycled and the restoration relied on natural, local materials
  • Families - With plenty of space, an outdoor pool, and kids under 14 staying for free in parents' rooms - ideal family holiday material
  • Total relaxation - The kind of tranquil hotel that is ideal for a summer getaway where all you need is a swimsuit and a good book
  • Back to Nature - Surrounded by large olive groves with sweeping views of the outstandingly beautiful countryside
from €220 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Azade Boutique Hotel

Chania (Crete)

A boutique hotel mixing history with modern flair, in Chania’s charming Old Town. Interiors feature vaulted ceilings, stone walls, and splashes of Mediterranean colour. With peaceful terraces, a wonderful hearty and homemade breakfast, and a shady courtyard, it's a stylish retreat for relaxation.

  • Total relaxation - Unwind with a rooftop yoga session, where the views of Chania’s terracotta rooftops and sea breeze enhance your experience
  • Great walks - Take a walk along the picturesque Venetian Harbour, lined with charming cafés, offering stunning sunset views over the sea
  • Local exploring - Perfectly positioned in Chania’s Old Town, explore cobblestone streets, vibrant markets, and Venetian architecture
  • Other Activities - Hop on a boat to explore the crystal-clear waters of nearby Balos Lagoon, ideal for a day of swimming and sunbathing
from €253 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Casa Delfino

Chania (Crete)

A beautifully restored 17th-century Chania mansion in the heart of town. Venetian style grandeur with contemporary opulence in all the unique suites. Intimate and luxurious with fantastic views and a great spa. Walking distance to Chania's best restaurants and main attractions. A charming haven.

  • Honeymoons - Book the Honeymoon Suite for sumptuous linens, a roof terrace boasting panoramic views of the harbour, and a spa bath for two
  • Owner managed - Run by the sixth-generation descendent of the 19th-century Genoese Delfino family who originally built the mansion
  • Total relaxation - A pampering massage, followed by a steam in the hammam are sure to work off all that sight seeing fatigie
  • Sights nearby - Chania’s charming old town is worth exploring, get lost on the ancient winding roads
from €270 for 1 room, 1 night including taxes & fees
Check availability on Expedia
Legacy Gastro Suites

Heraklion (Crete)

A five-star boutique hotel in the heart of Crete's seaside capital. Rooms are dressed in 1950s style and offer a unique gastro station where guests can sample delicious Greek cuisine; the best have king-size beds and sea views. Sample the restaurant's à la carte menu; an indulgent seafront hotel.

  • Beach Life - Located a stone's throw from the beach, this hotel is a perfect base for a beach holiday
  • Foodies - Foodies will fall for this hotel's gastro theme, in particular the in-room food station
  • Romantic Break - Couples love this hotel for its beautiful sea views and cosy suites
  • Sailing - Take a day trip to Dia Island accompanied by a gourmet picnic packed by the hotel
from €273 for 1 room, 1 night including taxes & fees
Check availability on Expedia